clc assembly cell command line tools version 4.1 Search Results


program velvet 1 1  (ATCC)
93
ATCC program velvet 1 1
Program Velvet 1 1, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 93 stars, based on 1 article reviews
program velvet 1 1 - by Bioz Stars, 2026-07
93/100 stars
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clc assembly cell v4.0.1  (CLC Bio)
90
CLC Bio clc assembly cell v4.0.1
Clc Assembly Cell V4.0.1, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
clc assembly cell v4.0.1 - by Bioz Stars, 2026-07
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clc_novo_assemble  (CLC Bio)
90
CLC Bio clc_novo_assemble
Clc Novo Assemble, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
clc_novo_assemble - by Bioz Stars, 2026-07
90/100 stars
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clc assembly cell  (CLC Bio)
90
CLC Bio clc assembly cell
Clc Assembly Cell, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clc+assembly+cell+command+line+tools+version+4%2E1/pmc03911442-62-6-9?v=CLC+Bio
Average 90 stars, based on 1 article reviews
clc assembly cell - by Bioz Stars, 2026-07
90/100 stars
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clc ngs cell  (CLC Bio)
90
CLC Bio clc ngs cell
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Clc Ngs Cell, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clc+assembly+cell+command+line+tools+version+4%2E1/pmc02712089-219-66-71?v=CLC+Bio
Average 90 stars, based on 1 article reviews
clc ngs cell - by Bioz Stars, 2026-07
90/100 stars
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clc mapper  (CLC Bio)
90
CLC Bio clc mapper
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Clc Mapper, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clc+assembly+cell+command+line+tools+version+4%2E1/10__1128_slash_genomea__00484___17-13-21-17?v=CLC+Bio
Average 90 stars, based on 1 article reviews
clc mapper - by Bioz Stars, 2026-07
90/100 stars
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clc assembly cell software  (CLC Bio)
90
CLC Bio clc assembly cell software
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Clc Assembly Cell Software, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clc+assembly+cell+command+line+tools+version+4%2E1/pmc04336579-426-12-16?v=CLC+Bio
Average 90 stars, based on 1 article reviews
clc assembly cell software - by Bioz Stars, 2026-07
90/100 stars
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clc de novo assembly cell version 4.0  (CLC Bio)
90
CLC Bio clc de novo assembly cell version 4.0
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Clc De Novo Assembly Cell Version 4.0, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clc+assembly+cell+command+line+tools+version+4%2E1/pmc04595844-161-11-18?v=CLC+Bio
Average 90 stars, based on 1 article reviews
clc de novo assembly cell version 4.0 - by Bioz Stars, 2026-07
90/100 stars
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clc genome assembler  (CLC Bio)
90
CLC Bio clc genome assembler
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Clc Genome Assembler, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clc+assembly+cell+command+line+tools+version+4%2E1/pmc05635682-80-9-13?v=CLC+Bio
Average 90 stars, based on 1 article reviews
clc genome assembler - by Bioz Stars, 2026-07
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clc assembly cell command line tools version 4.1  (CLC Bio)
90
CLC Bio clc assembly cell command line tools version 4.1
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Clc Assembly Cell Command Line Tools Version 4.1, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clc+assembly+cell+command+line+tools+version+4%2E1/pm26358478-123-20-28?v=CLC+Bio
Average 90 stars, based on 1 article reviews
clc assembly cell command line tools version 4.1 - by Bioz Stars, 2026-07
90/100 stars
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clc genome assembler v4.06  (CLC Bio)
90
CLC Bio clc genome assembler v4.06
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Clc Genome Assembler V4.06, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clc+assembly+cell+command+line+tools+version+4%2E1/pmc04791396-78-20-25?v=CLC+Bio
Average 90 stars, based on 1 article reviews
clc genome assembler v4.06 - by Bioz Stars, 2026-07
90/100 stars
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clc assembly cell clc quality trim v4.2 (quality trimming)  (CLC Bio)
90
CLC Bio clc assembly cell clc quality trim v4.2 (quality trimming)
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Clc Assembly Cell Clc Quality Trim V4.2 (Quality Trimming), supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clc+assembly+cell+command+line+tools+version+4%2E1/pmc05006888-49-30-38?v=CLC+Bio
Average 90 stars, based on 1 article reviews
clc assembly cell clc quality trim v4.2 (quality trimming) - by Bioz Stars, 2026-07
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Image Search Results


Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.

Journal: PLoS ONE

Article Title: Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling

doi: 10.1371/journal.pone.0006323

Figure Lengend Snippet: Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.

Article Snippet: The in silico generated reads were mapped either to the transcriptome or the complete genome using different programs: BLAT (parameters –oneOff 1), SSAHA2 (parameters –skip 2, -diff 0, -kmer 13, -solexa for 35 bp and 50 bp reads; -454 for 100 bp reads), Bowtie (parameters –k 1, -n 3, -e 2000), SeqMap (number of mismatches = 3), MAQ (parameters –n 3, -e 2000) and the commercial tool CLC NGS Cell [ www.clcbio.com ] (algorithm: clc_ref_assembly_long , parameters: -r ignore).

Techniques: